Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs148191408 | chr16:47730055 | TC/T | 2.14E-6 | 214 | 17.17 | 13.17 | 9 | KM Plot |
| KIRP | rs148213110 | chr1:48781873 | A/C | 3.49E-7 | 213 | 14.85 | 19.87 | 11.03 | KM Plot |
| KIRP | rs148218853 | chr1:89541258 | G/A | 9.75E-5 | 208 | 16.45 | 19 | 9.38 | KM Plot |
| KIRP | rs148264300 | chr17:80781925 | CTTATT/C | 4.71E-5 | 207 | 14.85 | 17.2 | 15.15 | KM Plot |
| KIRP | rs148297538 | chr15:24504310 | G/T | 8.89E-5 | 209 | 17 | 14.1 | 8.73 | KM Plot |
| KIRP | rs148530519 | chr1:89541974 | A/G | 9.75E-5 | 208 | 16.45 | 19 | 9.38 | KM Plot |
| KIRP | rs148550163 | chr16:4547786 | A/AG | 3.6E-6 | 213 | 16.45 | 12.63 | 9.92 | KM Plot |
| KIRP | rs148558753 | chr1:45910588 | C/CT | 6.25E-7 | 213 | 15.2 | 17 | 7.57 | KM Plot |
| KIRP | rs148873569 | chr17:80728406 | C/T | 8.85E-5 | 209 | 15.88 | 18 | 15.15 | KM Plot |
| KIRP | rs148882742 | chr3:99993738 | A/AC | 1.33E-6 | 205 | 16.7 | 19.3 | 2.63 | KM Plot |
| KIRP | rs149021237 | chr14:59984715 | A/G | 0.000205 | 213 | 16.43 | 18 | 11.2 | KM Plot |
| KIRP | rs149106202 | chr14:59826664 | CA/C | 0.000321 | 213 | 15.1 | 18.7 | 11.2 | KM Plot |
| KIRP | rs149279621 | chr11:34782955 | G/A | 0 | 212 | 15.88 | 16.72 | 3.83 | KM Plot |
| KIRP | rs149282461 | chr11:34973764 | G/C | 0 | 212 | 15.33 | 19.3 | 3.83 | KM Plot |
| KIRP | rs149484538 | chr15:24457296 | G/A | 7.7E-7 | 211 | 15.88 | 20.82 | 9.77 | KM Plot |